STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF6pre-mRNA-processing factor 6 isoform X1. (941 aa)    
Predicted Functional Partners:
PRPF8
pre-mRNA-processing-splicing factor 8.
   
 0.999
SART1
U4/U6.U5 tri-snRNP-associated protein 1 isoform X1.
   
 0.997
SNRNP40
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.997
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component isoform X1.
   
 0.997
PRPF31
U4/U6 small nuclear ribonucleoprotein Prp31 isoform X1.
   
 0.997
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.996
MFAP1
Microfibrillar-associated protein 1.
   
 0.996
TXNL4A
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.996
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1.
   
 0.996
ZMAT2
Zinc finger matrin-type protein 2.
   
 0.991
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.