STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX5LIM/homeobox protein Lhx5. (402 aa)    
Predicted Functional Partners:
CCNK
cyclin-K; Belongs to the cyclin family.
    
   0.808
TLX1
T-cell leukemia homeobox protein 1.
    
 
 0.668
DBX2
Homeobox protein DBX2.
    
 
 0.642
BARHL1
barH-like 1 homeobox protein.
   
 
 0.562
ZIC4
Zinc finger protein ZIC 4 isoform X1.
   
 
 0.562
LDB1
LIM domain-binding protein 1 isoform X1.
    
 0.549
OLIG3
Oligodendrocyte transcription factor 3.
   
  
 0.536
ZIC2
Zinc finger protein ZIC 2.
  
 
 0.534
PTF1A
Pancreas transcription factor 1 subunit alpha.
    
 0.526
RELN
Reelin isoform X1.
      
 0.525
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.