STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A1Collagen alpha-1(VI) chain. (1027 aa)    
Predicted Functional Partners:
COL6A2
Collagen alpha-2(VI) chain.
  
0.991
COL1A1
Collagen alpha-1(I) chain.
  
0.956
CD44
CD44 antigen.
    
 0.913
GP6
Platelet glycoprotein VI.
     
 0.906
COL3A1
Collagen alpha-1(III) chain.
  
0.869
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.844
ITGA8
Integrin alpha-8 isoform X1; Belongs to the integrin alpha chain family.
    
 0.838
COL1A2
Collagen alpha-2(I) chain.
  
0.824
ITGA11
Integrin alpha-11; Belongs to the integrin alpha chain family.
   
 
 0.813
ITGA1
Integrin alpha-1 isoform X1; Belongs to the integrin alpha chain family.
   
 
 0.813
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.