STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBDUbiquitin D. (165 aa)    
Predicted Functional Partners:
UBA6
Ubiquitin-like modifier-activating enzyme 6.
   
 0.924
MYSM1
Histone H2A deubiquitinase MYSM1.
   
 0.893
LOC101364011
Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.
   
 0.847
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
   
 0.847
RPS28
40S ribosomal protein S28.
   
 0.832
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 0.826
NBR1
Next to BRCA1 gene 1 protein.
   
 0.818
TRAF7
E3 ubiquitin-protein ligase TRAF7.
   
 0.783
UBXN7
UBX domain-containing protein 7.
    
 0.770
NUB1
NEDD8 ultimate buster 1 isoform X1.
    
 0.764
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.