STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF130E3 ubiquitin-protein ligase RNF130 isoform X1. (419 aa)    
Predicted Functional Partners:
KLC1
Kinesin light chain 1 isoform X1.
      
 0.648
PTPN2
Tyrosine-protein phosphatase non-receptor type.
    
 
 0.618
UBA52
ubiquitin-60S ribosomal protein L40 isoform X1.
    
 0.552
GRAMD4
GRAM domain-containing protein 4.
   
  
 0.525
ATP2A2
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
    
 
 0.525
CPEB3
Cytoplasmic polyadenylation element-binding protein 3 isoform X1.
      
 0.525
ITSN1
Intersectin-1 isoform X1.
      
 0.523
FAM131B
Protein FAM131B isoform X1.
      
 0.522
GTF2H5
General transcription factor IIH subunit 5.
     
 0.510
RPS27A
ubiquitin-40S ribosomal protein S27a.
    
 0.502
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.