OAF protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OAF

Out at first protein homolog. (282 aa)

Predicted Functional Partners:

TCN2

0.730

LEMD2

0.694

DNAJC24

0.657

ILDR2

0.617

ATP4A

0.522

DAG1

0.435

GEMIN2

0.416

LOC101364501

0.416

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP4A	DNAJC24	A0A2U3X4D4	A0A2U3WCH3	Sodium/potassium-transporting ATPase subunit alpha.	dnaJ homolog subfamily C member 24.	0.447
ATP4A	ILDR2	A0A2U3X4D4	A0A2U3WHY9	Sodium/potassium-transporting ATPase subunit alpha.	LOW QUALITY PROTEIN: immunoglobulin-like domain-containing receptor 2.	0.454
ATP4A	LEMD2	A0A2U3X4D4	A0A2U3WGF1	Sodium/potassium-transporting ATPase subunit alpha.	LEM domain-containing protein 2.	0.545
ATP4A	OAF	A0A2U3X4D4	A0A2U3WTR2	Sodium/potassium-transporting ATPase subunit alpha.	Out at first protein homolog.	0.522
DAG1	OAF	A0A2U3VV73	A0A2U3WTR2	Dystroglycan.	Out at first protein homolog.	0.435
DAG1	TCN2	A0A2U3VV73	A0A2U3VX48	Dystroglycan.	Transcobalamin-2.	0.526
DNAJC24	ATP4A	A0A2U3WCH3	A0A2U3X4D4	dnaJ homolog subfamily C member 24.	Sodium/potassium-transporting ATPase subunit alpha.	0.447
DNAJC24	ILDR2	A0A2U3WCH3	A0A2U3WHY9	dnaJ homolog subfamily C member 24.	LOW QUALITY PROTEIN: immunoglobulin-like domain-containing receptor 2.	0.622
DNAJC24	LEMD2	A0A2U3WCH3	A0A2U3WGF1	dnaJ homolog subfamily C member 24.	LEM domain-containing protein 2.	0.744
DNAJC24	OAF	A0A2U3WCH3	A0A2U3WTR2	dnaJ homolog subfamily C member 24.	Out at first protein homolog.	0.657
GEMIN2	LEMD2	A0A2U3VWR3	A0A2U3WGF1	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	LEM domain-containing protein 2.	0.564
GEMIN2	LOC101364501	A0A2U3VWR3	A0A2U3W168	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.900
GEMIN2	OAF	A0A2U3VWR3	A0A2U3WTR2	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Out at first protein homolog.	0.416
ILDR2	ATP4A	A0A2U3WHY9	A0A2U3X4D4	LOW QUALITY PROTEIN: immunoglobulin-like domain-containing receptor 2.	Sodium/potassium-transporting ATPase subunit alpha.	0.454
ILDR2	DNAJC24	A0A2U3WHY9	A0A2U3WCH3	LOW QUALITY PROTEIN: immunoglobulin-like domain-containing receptor 2.	dnaJ homolog subfamily C member 24.	0.622
ILDR2	LEMD2	A0A2U3WHY9	A0A2U3WGF1	LOW QUALITY PROTEIN: immunoglobulin-like domain-containing receptor 2.	LEM domain-containing protein 2.	0.659
ILDR2	OAF	A0A2U3WHY9	A0A2U3WTR2	LOW QUALITY PROTEIN: immunoglobulin-like domain-containing receptor 2.	Out at first protein homolog.	0.617
LEMD2	ATP4A	A0A2U3WGF1	A0A2U3X4D4	LEM domain-containing protein 2.	Sodium/potassium-transporting ATPase subunit alpha.	0.545
LEMD2	DNAJC24	A0A2U3WGF1	A0A2U3WCH3	LEM domain-containing protein 2.	dnaJ homolog subfamily C member 24.	0.744
LEMD2	GEMIN2	A0A2U3WGF1	A0A2U3VWR3	LEM domain-containing protein 2.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.564