STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TPRG1Tumor protein p63-regulated gene 1 protein. (280 aa)    
Predicted Functional Partners:
SRSF2
Serine/arginine-rich splicing factor 2.
   
 0.842
SRSF9
Serine/arginine-rich splicing factor 9.
   
 0.753
SRSF1
Serine/arginine-rich splicing factor 1.
   
 0.753
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.732
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.677
SNRNP35
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 0.642
SNRNP70
U1 small nuclear ribonucleoprotein 70 kDa isoform X1.
   
 0.642
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.617
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.612
SRSF4
Serine/arginine-rich splicing factor 4.
   
 0.601
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.