STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101375894UPF0568 protein C14orf166-like. (243 aa)    
Predicted Functional Partners:
DDX1
ATP-dependent RNA helicase DDX1 isoform X1.
   
 0.878
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.846
FAM98B
Protein FAM98B.
    
 0.836
FAM98A
Protein FAM98A isoform X1.
    
 
 0.820
SLFNL1
Schlafen-like protein 1 isoform X1.
   
 0.755
LOC101375992
Ashwin isoform X1.
    
 0.701
FAM98C
Protein FAM98C.
    
 
 0.605
LSM12
Protein LSM12 homolog.
    
 
 0.566
ELAVL4
ELAV-like protein; Belongs to the RRM elav family.
   
  
 0.547
DHX15
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
  
 0.545
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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