UBE2U protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBE2U

Ubiquitin-conjugating enzyme E2 U. (320 aa)

Predicted Functional Partners:

LOC101378002

0.900

LOC101364011

0.845

UBE2V1

0.845

UBE2Z

0.829

RAD18

0.819

RPS27A

0.769

UBOX5

0.751

TRIP12

0.717

RNF40

0.715

RNF20

0.715

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101364011	LOC101378002	A0A2U3W734	A0A2U3Z9P5	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	0.845
LOC101364011	RAD18	A0A2U3W734	A0A2U3VE84	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	E3 ubiquitin-protein ligase RAD18 isoform X1.	0.598
LOC101364011	RPS27A	A0A2U3W734	A0A2U3W6C1	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	ubiquitin-40S ribosomal protein S27a.	0.997
LOC101364011	UBE2U	A0A2U3W734	A0A2U3WV10	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	Ubiquitin-conjugating enzyme E2 U.	0.845
LOC101364011	UBE2V1	A0A2U3W734	A0A2U3WT75	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.	0.813
LOC101364011	UBE2Z	A0A2U3W734	A0A2U3VK69	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	Ubiquitin-conjugating enzyme E2 Z.	0.826
LOC101378002	LOC101364011	A0A2U3Z9P5	A0A2U3W734	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	0.845
LOC101378002	RAD18	A0A2U3Z9P5	A0A2U3VE84	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	E3 ubiquitin-protein ligase RAD18 isoform X1.	0.819
LOC101378002	RNF20	A0A2U3Z9P5	A0A2U3WXL0	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	E3 ubiquitin protein ligase; Belongs to the BRE1 family.	0.715
LOC101378002	RNF40	A0A2U3Z9P5	A0A2U3VQ53	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	E3 ubiquitin protein ligase; Belongs to the BRE1 family.	0.715
LOC101378002	RPS27A	A0A2U3Z9P5	A0A2U3W6C1	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	ubiquitin-40S ribosomal protein S27a.	0.769
LOC101378002	TRIP12	A0A2U3Z9P5	A0A2U3VM55	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	E3 ubiquitin-protein ligase TRIP12 isoform X1.	0.717
LOC101378002	UBE2U	A0A2U3Z9P5	A0A2U3WV10	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	Ubiquitin-conjugating enzyme E2 U.	0.900
LOC101378002	UBE2V1	A0A2U3Z9P5	A0A2U3WT75	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.	0.845
LOC101378002	UBE2Z	A0A2U3Z9P5	A0A2U3VK69	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	Ubiquitin-conjugating enzyme E2 Z.	0.739
LOC101378002	UBOX5	A0A2U3Z9P5	A0A2U3ZDM6	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	RING finger protein 37 isoform X1.	0.751
RAD18	LOC101364011	A0A2U3VE84	A0A2U3W734	E3 ubiquitin-protein ligase RAD18 isoform X1.	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	0.598
RAD18	LOC101378002	A0A2U3VE84	A0A2U3Z9P5	E3 ubiquitin-protein ligase RAD18 isoform X1.	LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U-like.	0.819
RAD18	RPS27A	A0A2U3VE84	A0A2U3W6C1	E3 ubiquitin-protein ligase RAD18 isoform X1.	ubiquitin-40S ribosomal protein S27a.	0.911
RAD18	TRIP12	A0A2U3VE84	A0A2U3VM55	E3 ubiquitin-protein ligase RAD18 isoform X1.	E3 ubiquitin-protein ligase TRIP12 isoform X1.	0.523