STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDKAL1Threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1. (590 aa)    
Predicted Functional Partners:
EXOSC3
Exosome complex component RRP40.
    
 
 0.718
TRMT10A
tRNA methyltransferase 10 homolog A.
   
  
 0.676
MMS19
MMS19 nucleotide excision repair protein homolog isoform X1.
   
 
 0.634
UROD
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.633
ENDOV
Endonuclease V.
  
 
 0.633
LOC101376561
Nef-associated protein 1 isoform X1.
  
  
 0.580
EPRS
Bifunctional glutamate/proline--tRNA ligase isoform X1.
  
  
 0.558
TTC6
Tetratricopeptide repeat protein 6.
     
 0.537
TRDMT1
tRNA (Cytosine(38)-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
   
  
 0.534
TMEM38B
Trimeric intracellular cation channel type B.
   
  
 0.534
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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