STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM179BTransmembrane protein 179B. (219 aa)    
Predicted Functional Partners:
YARS
Tyrosine--tRNA ligase.
  
  
 0.799
EPRS
Bifunctional glutamate/proline--tRNA ligase isoform X1.
  
 
 0.762
VARS
valine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.746
SUPT3H
Transcription initiation protein SPT3 homolog.
    
 
 0.710
CCDC101
SAGA-associated factor 29 homolog isoform X1.
    
 
 0.692
TAF12
Transcription initiation factor TFIID subunit 12 isoform X1.
    
 
 0.677
WARS
tryptophan--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.668
TADA3
Transcriptional adapter 3 isoform X1.
    
 
 0.662
NDUFAB1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.656
PALB2
Partner and localizer of BRCA2.
   
 
 0.656
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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