STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LYSTLysosomal-trafficking regulator. (3800 aa)    
Predicted Functional Partners:
CUL7
Cullin-7; Belongs to the cullin family.
      
 0.677
TMEM132C
Transmembrane protein 132C.
   
 
 0.544
SH2D1A
SH2 domain-containing protein 1A; Cytoplasmic adapter regulating receptors of the signaling lymphocytic activation molecule (SLAM) family such as SLAMF1, CD244, LY9, CD84, SLAMF6 and SLAMF7. In SLAM signaling seems to cooperate with SH2D1B/EAT-2.
   
  
 0.539
AP3B1
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 
 0.533
HPS5
Hermansky-Pudlak syndrome 5 protein homolog; May regulate the synthesis and function of lysosomes and of highly specialized organelles, such as melanosomes and platelet dense granules.
   
  
 0.530
BLOC1S4
Biogenesis of lysosome-related organelles complex 1 subunit 4.
      
 0.526
ARID5B
AT-rich interactive domain-containing protein 5B isoform X1.
      
 0.526
TMEM50B
Transmembrane protein 50B.
      
 0.526
MRAP2
Melanocortin-2 receptor accessory protein 2.
      
 0.524
STX11
Syntaxin-11; Belongs to the syntaxin family.
      
 0.522
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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