DENND2A protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DENND2A

DENN domain-containing protein 2A. (1090 aa)

Predicted Functional Partners:

RAB9B

0.828

RHOBTB3

0.815

RAB9A

0.655

RAB35

0.646

IFT27

0.640

AVL9

0.621

KDM7A

0.619

RIC1

0.584

NMT1

0.523

RAB13

0.506

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AVL9	DENND2A	A0A2U3WYL5	A0A2U3WXB5	Late secretory pathway protein AVL9 homolog.	DENN domain-containing protein 2A.	0.621
AVL9	RAB35	A0A2U3WYL5	A0A2U3VNQ4	Late secretory pathway protein AVL9 homolog.	Ras-related protein Rab-35 isoform X1.	0.630
AVL9	RAB9B	A0A2U3WYL5	A0A2U3X197	Late secretory pathway protein AVL9 homolog.	Ras-related protein Rab-9B.	0.522
AVL9	RHOBTB3	A0A2U3WYL5	A0A2U3WDM8	Late secretory pathway protein AVL9 homolog.	Rho-related BTB domain-containing protein 3.	0.449
AVL9	RIC1	A0A2U3WYL5	A0A2U3WH46	Late secretory pathway protein AVL9 homolog.	RAB6A-GEF complex partner protein 1 isoform X1.	0.913
DENND2A	AVL9	A0A2U3WXB5	A0A2U3WYL5	DENN domain-containing protein 2A.	Late secretory pathway protein AVL9 homolog.	0.621
DENND2A	IFT27	A0A2U3WXB5	A0A2U3X4Y6	DENN domain-containing protein 2A.	Intraflagellar transport protein 27 homolog isoform X1.	0.640
DENND2A	KDM7A	A0A2U3WXB5	A0A2U3WXB4	DENN domain-containing protein 2A.	Lysine-specific demethylase 7A.	0.619
DENND2A	NMT1	A0A2U3WXB5	A0A2U3WF77	DENN domain-containing protein 2A.	Glycylpeptide N-tetradecanoyltransferase; Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins; Belongs to the NMT family.	0.523
DENND2A	RAB13	A0A2U3WXB5	A0A2U3W4P2	DENN domain-containing protein 2A.	Ras-related protein Rab-13.	0.506
DENND2A	RAB35	A0A2U3WXB5	A0A2U3VNQ4	DENN domain-containing protein 2A.	Ras-related protein Rab-35 isoform X1.	0.646
DENND2A	RAB9A	A0A2U3WXB5	A0A2U3ZQQ7	DENN domain-containing protein 2A.	Ras-related protein Rab-9A.	0.655
DENND2A	RAB9B	A0A2U3WXB5	A0A2U3X197	DENN domain-containing protein 2A.	Ras-related protein Rab-9B.	0.828
DENND2A	RHOBTB3	A0A2U3WXB5	A0A2U3WDM8	DENN domain-containing protein 2A.	Rho-related BTB domain-containing protein 3.	0.815
DENND2A	RIC1	A0A2U3WXB5	A0A2U3WH46	DENN domain-containing protein 2A.	RAB6A-GEF complex partner protein 1 isoform X1.	0.584
IFT27	DENND2A	A0A2U3X4Y6	A0A2U3WXB5	Intraflagellar transport protein 27 homolog isoform X1.	DENN domain-containing protein 2A.	0.640
KDM7A	DENND2A	A0A2U3WXB4	A0A2U3WXB5	Lysine-specific demethylase 7A.	DENN domain-containing protein 2A.	0.619
NMT1	DENND2A	A0A2U3WF77	A0A2U3WXB5	Glycylpeptide N-tetradecanoyltransferase; Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins; Belongs to the NMT family.	DENN domain-containing protein 2A.	0.523
RAB13	DENND2A	A0A2U3W4P2	A0A2U3WXB5	Ras-related protein Rab-13.	DENN domain-containing protein 2A.	0.506
RAB35	AVL9	A0A2U3VNQ4	A0A2U3WYL5	Ras-related protein Rab-35 isoform X1.	Late secretory pathway protein AVL9 homolog.	0.630