STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX1ATP-dependent RNA helicase DDX1 isoform X1. (740 aa)    
Predicted Functional Partners:
FAM98A
Protein FAM98A isoform X1.
   
 
 0.957
DHX36
ATP-dependent RNA helicase DHX36 isoform X1.
   
 0.956
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.949
FAM98B
Protein FAM98B.
   
 0.937
LOC101375992
Ashwin isoform X1.
    
 0.913
DDX21
Nucleolar RNA helicase 2.
   
 
0.896
LOC101366608
UPF0568 protein C14orf166 homolog.
   
 0.878
LOC101375894
UPF0568 protein C14orf166-like.
   
 0.878
RRP1B
Ribosomal RNA processing protein 1 homolog B.
   
 0.764
BPIFA1
BPI fold-containing family A member 1.
    
 
 0.757
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.