STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101379690Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (427 aa)    
Predicted Functional Partners:
NCOR1
Nuclear receptor corepressor 1 isoform X1.
    
 0.993
NCOR2
Nuclear receptor corepressor 2.
    
 0.970
SIN3A
Paired amphipathic helix protein Sin3a.
   
 0.945
GPS2
G protein pathway suppressor 2 isoform X1.
    
 0.911
ARID4B
AT-rich interactive domain-containing protein 4B isoform X1.
   
 0.881
ARID4A
AT-rich interactive domain-containing protein 4A isoform X1.
   
 0.881
LOC101366045
Histone H2A; Belongs to the histone H2A family.
   
 0.837
LOC101364558
Histone H2A; Belongs to the histone H2A family.
   
 0.837
RXRA
Retinoic acid receptor RXR-alpha isoform X1.
    
 0.828
TBL1XR1
F-box-like/WD repeat-containing protein TBL1XR1.
   
 0.811
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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