MICAL2 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MICAL2

Protein-methionine sulfoxide oxidase MICAL2 isoform X1. (1124 aa)

Predicted Functional Partners:

MICALCL

0.899

RAB8A

0.868

RAB8B

0.868

EHBP1L1

0.576

RAB10

0.568

VPS13D

0.522

CORO1C

0.500

RAB13

0.458

LOC101386597

0.458

GDI2

0.458

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CORO1C	MICAL2	A0A2U3X285	A0A2U3Z9Y2	Coronin; Belongs to the WD repeat coronin family.	Protein-methionine sulfoxide oxidase MICAL2 isoform X1.	0.500
CORO1C	MICALCL	A0A2U3X285	A0A2U3VIK1	Coronin; Belongs to the WD repeat coronin family.	MICAL C-terminal-like protein.	0.500
EHBP1L1	GDI2	A0A2U3VGT8	A0A2U3WRH1	EH domain-binding protein 1-like protein 1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.483
EHBP1L1	LOC101386597	A0A2U3VGT8	A0A2U3W9G9	EH domain-binding protein 1-like protein 1.	Ras-related protein Rab-13-like.	0.630
EHBP1L1	MICAL2	A0A2U3VGT8	A0A2U3Z9Y2	EH domain-binding protein 1-like protein 1.	Protein-methionine sulfoxide oxidase MICAL2 isoform X1.	0.576
EHBP1L1	MICALCL	A0A2U3VGT8	A0A2U3VIK1	EH domain-binding protein 1-like protein 1.	MICAL C-terminal-like protein.	0.576
EHBP1L1	RAB10	A0A2U3VGT8	A0A2U3VJM8	EH domain-binding protein 1-like protein 1.	Ras-related protein Rab-10.	0.599
EHBP1L1	RAB13	A0A2U3VGT8	A0A2U3W4P2	EH domain-binding protein 1-like protein 1.	Ras-related protein Rab-13.	0.630
EHBP1L1	RAB8A	A0A2U3VGT8	A0A2U3W8M8	EH domain-binding protein 1-like protein 1.	Ras-related protein Rab-8A.	0.629
EHBP1L1	RAB8B	A0A2U3VGT8	A0A2U3WRN5	EH domain-binding protein 1-like protein 1.	Ras-related protein Rab-8B isoform X1.	0.629
EHBP1L1	VPS13D	A0A2U3VGT8	A0A2U3WPW5	EH domain-binding protein 1-like protein 1.	Vacuolar protein sorting-associated protein 13D.	0.529
GDI2	EHBP1L1	A0A2U3WRH1	A0A2U3VGT8	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	EH domain-binding protein 1-like protein 1.	0.483
GDI2	LOC101386597	A0A2U3WRH1	A0A2U3W9G9	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-13-like.	0.688
GDI2	MICAL2	A0A2U3WRH1	A0A2U3Z9Y2	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Protein-methionine sulfoxide oxidase MICAL2 isoform X1.	0.458
GDI2	MICALCL	A0A2U3WRH1	A0A2U3VIK1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	MICAL C-terminal-like protein.	0.458
GDI2	RAB10	A0A2U3WRH1	A0A2U3VJM8	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-10.	0.768
GDI2	RAB13	A0A2U3WRH1	A0A2U3W4P2	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-13.	0.688
GDI2	RAB8A	A0A2U3WRH1	A0A2U3W8M8	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-8A.	0.785
GDI2	RAB8B	A0A2U3WRH1	A0A2U3WRN5	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-8B isoform X1.	0.785
GDI2	VPS13D	A0A2U3WRH1	A0A2U3WPW5	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Vacuolar protein sorting-associated protein 13D.	0.405