RBAK protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBAK

RB-associated KRAB zinc finger protein. (723 aa)

Predicted Functional Partners:

BSND

0.708

CARTPT

0.610

BBX

0.532

PAPD7

0.526

EPC2

0.525

SFXN5

0.497

PHTF1

0.487

MED4

0.472

GNA12

0.469

THAP7

0.464

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBX	RBAK	A0A2U3VB35	A0A2U3ZAE7	HMG box transcription factor BBX isoform X1.	RB-associated KRAB zinc finger protein.	0.532
BSND	CARTPT	A0A2U3VY55	A0A2U3W5T2	Barttin.	Cocaine- and amphetamine-regulated transcript protein.	0.448
BSND	RBAK	A0A2U3VY55	A0A2U3ZAE7	Barttin.	RB-associated KRAB zinc finger protein.	0.708
CARTPT	BSND	A0A2U3W5T2	A0A2U3VY55	Cocaine- and amphetamine-regulated transcript protein.	Barttin.	0.448
CARTPT	RBAK	A0A2U3W5T2	A0A2U3ZAE7	Cocaine- and amphetamine-regulated transcript protein.	RB-associated KRAB zinc finger protein.	0.610
EPC2	PHTF1	A0A2U3W122	A0A2U3W099	Enhancer of polycomb homolog.	Putative homeodomain transcription factor 1 isoform X1.	0.441
EPC2	RBAK	A0A2U3W122	A0A2U3ZAE7	Enhancer of polycomb homolog.	RB-associated KRAB zinc finger protein.	0.525
EPC2	SFXN5	A0A2U3W122	A0A2U3VU09	Enhancer of polycomb homolog.	Sidoreflexin.	0.497
GNA12	RBAK	A0A2U3VHP9	A0A2U3ZAE7	Guanine nucleotide-binding protein subunit alpha-12 isoform X1.	RB-associated KRAB zinc finger protein.	0.469
MED4	PHTF1	A0A2U3VVT8	A0A2U3W099	Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Putative homeodomain transcription factor 1 isoform X1.	0.434
MED4	RBAK	A0A2U3VVT8	A0A2U3ZAE7	Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	RB-associated KRAB zinc finger protein.	0.472
MED4	SFXN5	A0A2U3VVT8	A0A2U3VU09	Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Sidoreflexin.	0.434
PAPD7	RBAK	A0A2U3X2X7	A0A2U3ZAE7	Non-canonical poly(A) RNA polymerase PAPD7 isoform X2.	RB-associated KRAB zinc finger protein.	0.526
PHTF1	EPC2	A0A2U3W099	A0A2U3W122	Putative homeodomain transcription factor 1 isoform X1.	Enhancer of polycomb homolog.	0.441
PHTF1	MED4	A0A2U3W099	A0A2U3VVT8	Putative homeodomain transcription factor 1 isoform X1.	Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.434
PHTF1	RBAK	A0A2U3W099	A0A2U3ZAE7	Putative homeodomain transcription factor 1 isoform X1.	RB-associated KRAB zinc finger protein.	0.487
PHTF1	SFXN5	A0A2U3W099	A0A2U3VU09	Putative homeodomain transcription factor 1 isoform X1.	Sidoreflexin.	0.442
RBAK	BBX	A0A2U3ZAE7	A0A2U3VB35	RB-associated KRAB zinc finger protein.	HMG box transcription factor BBX isoform X1.	0.532
RBAK	BSND	A0A2U3ZAE7	A0A2U3VY55	RB-associated KRAB zinc finger protein.	Barttin.	0.708
RBAK	CARTPT	A0A2U3ZAE7	A0A2U3W5T2	RB-associated KRAB zinc finger protein.	Cocaine- and amphetamine-regulated transcript protein.	0.610