STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD9chromodomain-helicase-DNA-binding protein 9 isoform X1. (2901 aa)    
Predicted Functional Partners:
PHF3
PHD finger protein 3.
   
 0.801
BDP1
Transcription factor TFIIIB component B'' homolog.
   
 
 0.693
MYSM1
Histone H2A deubiquitinase MYSM1.
   
 0.664
MED12L
LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 12-like protein.
   
 0.653
ARID4B
AT-rich interactive domain-containing protein 4B isoform X1.
   
 0.646
PHIP
PH-interacting protein.
  
 0.632
ARID4A
AT-rich interactive domain-containing protein 4A isoform X1.
   
 0.619
TNKS2
Poly [ADP-ribose] polymerase.
   
 0.586
TPST1
Protein-tyrosine sulfotransferase; Catalyzes the O-sulfation of tyrosine residues within acidic motifs of polypeptides, using 3'-phosphoadenylyl sulfate (PAPS) as cosubstrate; Belongs to the protein sulfotransferase family.
   
 0.585
FANCM
Fanconi anemia group M protein.
    
 0.574
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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