STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDAC6Histone deacetylase 6. (1164 aa)    
Predicted Functional Partners:
VCP
Transitional endoplasmic reticulum ATPase isoform X1; Belongs to the AAA ATPase family.
   
 0.959
TARDBP
TAR DNA-binding protein 43 isoform X1.
   
 0.928
CTTN
Src substrate cortactin.
    
 0.898
RPS27A
ubiquitin-40S ribosomal protein S27a.
    
 0.894
PARK2
RBR-type E3 ubiquitin transferase.
    
 0.863
HSF1
Heat shock factor protein 1 isoform X1.
    
 0.816
PTGES3
Prostaglandin E synthase 3 isoform X1.
   
 0.800
ARID4B
AT-rich interactive domain-containing protein 4B isoform X1.
    
 0.798
ARID4A
AT-rich interactive domain-containing protein 4A isoform X1.
    
 0.798
LOC101366045
Histone H2A; Belongs to the histone H2A family.
   
 0.792
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.