STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101375059LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL13. (740 aa)    
Predicted Functional Partners:
TTLL5
Tubulin polyglutamylase TTLL5 isoform X1.
      
0.620
OCIAD2
OCIA domain-containing protein 2 isoform X1.
      
 0.523
SNX11
Sorting nexin-11.
      
 0.523
UBE2Z
Ubiquitin-conjugating enzyme E2 Z.
      
 0.522
CEP41
Centrosomal protein of 41 kDa isoform X1.
      
 0.522
SNRPD2
Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.
      
 0.522
AGBL5
Cytosolic carboxypeptidase-like protein 5 isoform X1.
      
 0.522
LOC101368825
LOW QUALITY PROTEIN: centrosomal protein of 41 kDa-like.
      
 0.522
KIF21A
Kinesin-like protein KIF21A isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.495
SIX5
Homeobox protein SIX5.
   
  
 0.480
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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