STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPG20Spartin isoform X2. (724 aa)    
Predicted Functional Partners:
LOC101364243
IST1 homolog.
    
 
 0.790
LOC101379379
LOW QUALITY PROTEIN: IST1 homolog.
    
 
 0.790
WWP1
E3 ubiquitin-protein ligase.
    
 
 0.767
TOR4A
torsin-4A.
      
 0.727
NIPA1
Magnesium transporter NIPA1.
   
  
 0.675
ITCH
E3 ubiquitin-protein ligase.
    
 
 0.660
ATL1
Atlastin-1 isoform X1.
      
 0.622
MITD1
MIT domain-containing protein 1.
      
 0.618
BSCL2
Seipin isoform X1.
      
 0.618
PTPN23
Tyrosine-protein phosphatase non-receptor type 23 isoform X1.
      
 0.598
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.