STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEUROD1Neurogenic differentiation factor. (356 aa)    
Predicted Functional Partners:
INSM1
Insulinoma-associated protein 1.
   
 0.642
PAX6
Paired box protein Pax-6 isoform X1.
   
 
 0.614
PAX4
Paired box protein Pax-4.
   
 
 0.590
FOXG1
Forkhead box protein G1.
   
  
 0.561
SLC12A5
Solute carrier family 12 member 5 isoform X1.
   
  
 0.543
NKX6-1
Homeobox protein Nkx-6.1.
   
  
 0.526
NES
Nestin; Belongs to the intermediate filament family.
    
 
 0.523
BDNF
Brain-derived neurotrophic factor; During development, promotes the survival and differentiation of selected neuronal populations of the peripheral and central nervous systems. Participates in axonal growth, pathfinding and in the modulation of dendritic growth and morphology. Major regulator of synaptic transmission and plasticity at adult synapses in many regions of the CNS.
      
 0.522
RFX6
DNA-binding protein RFX6.
   
  
 0.508
ASCL1
Achaete-scute homolog 1.
   
 
0.501
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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