STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NLRC3Protein NLRC3 isoform X1. (1068 aa)    
Predicted Functional Partners:
ZDHHC1
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.761
RNF5
E3 ubiquitin-protein ligase RNF5.
   
  
 0.711
TRIM56
E3 ubiquitin-protein ligase TRIM56.
   
 0.633
NLRC4
LOW QUALITY PROTEIN: NLR family CARD domain-containing protein 4.
   
 
 0.562
AMFR
E3 ubiquitin-protein ligase AMFR.
    
 
 0.560
IKBKB
Inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1.
   
 0.534
PGLYRP2
N-acetylmuramoyl-L-alanine amidase.
      
 0.523
CLEC2L
C-type lectin domain family 2 member L.
      
 0.497
RIPK2
Receptor-interacting serine/threonine-protein kinase 2; Serine/threonine/tyrosine kinase that plays an essential role in modulation of innate and adaptive immune responses. Upon stimulation by bacterial peptidoglycans, NOD1 and NOD2 are activated, oligomerize and recruit RIPK2 through CARD-CARD domains.
   
 0.489
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.484
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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