STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAF7E3 ubiquitin-protein ligase TRAF7. (670 aa)    
Predicted Functional Partners:
UBA52
ubiquitin-60S ribosomal protein L40 isoform X1.
    
  0.991
BIRC6
Baculoviral IAP repeat-containing protein 6.
    
 0.931
ZFAND4
AN1-type zinc finger protein 4 isoform X1.
   
 0.898
MIB2
E3 ubiquitin-protein ligase MIB2 isoform X1.
   
 0.857
RPS27A
ubiquitin-40S ribosomal protein S27a.
    
 0.816
NEDD8
NEDD8.
    
 0.797
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.788
LOC105757892
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.788
LOC105758044
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.788
UBC
polyubiquitin-C.
   
 0.783
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.