UBE2W protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBE2W

Ubiquitin-conjugating enzyme E2 W isoform X1. (182 aa)

Predicted Functional Partners:

LOC101364011

0.935

UBE2V1

0.935

TRIP12

0.881

UBE2V2

0.865

UBE2H

0.773

UBE2J2

0.763

RNF166

0.761

UBA52

0.742

UBE2J1

0.740

UBE2O

0.736

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101364011	UBA52	A0A2U3W734	A0A2U3ZJX2	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	ubiquitin-60S ribosomal protein L40 isoform X1.	0.996
LOC101364011	UBE2H	A0A2U3W734	A0A2U3VS25	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	Ubiquitin-conjugating enzyme E2 H isoform X1; Belongs to the ubiquitin-conjugating enzyme family.	0.848
LOC101364011	UBE2J1	A0A2U3W734	A0A2U3W7Y9	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	Ubiquitin-conjugating enzyme E2 J1.	0.922
LOC101364011	UBE2J2	A0A2U3W734	A0A2U3WFL7	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	Ubiquitin-conjugating enzyme E2 J2.	0.815
LOC101364011	UBE2O	A0A2U3W734	A0A2U3VHQ1	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	E2/E3 hybrid ubiquitin-protein ligase UBE2O.	0.826
LOC101364011	UBE2V1	A0A2U3W734	A0A2U3WT75	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.	0.813
LOC101364011	UBE2V2	A0A2U3W734	A0A2U3ZB83	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	Ubiquitin-conjugating enzyme E2 variant 2 isoform X1.	0.444
LOC101364011	UBE2W	A0A2U3W734	A0A2U3ZK98	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	Ubiquitin-conjugating enzyme E2 W isoform X1.	0.935
RNF166	UBE2W	A0A2U3VCA4	A0A2U3ZK98	RING finger protein 166 isoform X1.	Ubiquitin-conjugating enzyme E2 W isoform X1.	0.761
TRIP12	UBA52	A0A2U3VM55	A0A2U3ZJX2	E3 ubiquitin-protein ligase TRIP12 isoform X1.	ubiquitin-60S ribosomal protein L40 isoform X1.	0.806
TRIP12	UBE2H	A0A2U3VM55	A0A2U3VS25	E3 ubiquitin-protein ligase TRIP12 isoform X1.	Ubiquitin-conjugating enzyme E2 H isoform X1; Belongs to the ubiquitin-conjugating enzyme family.	0.655
TRIP12	UBE2J1	A0A2U3VM55	A0A2U3W7Y9	E3 ubiquitin-protein ligase TRIP12 isoform X1.	Ubiquitin-conjugating enzyme E2 J1.	0.683
TRIP12	UBE2J2	A0A2U3VM55	A0A2U3WFL7	E3 ubiquitin-protein ligase TRIP12 isoform X1.	Ubiquitin-conjugating enzyme E2 J2.	0.400
TRIP12	UBE2O	A0A2U3VM55	A0A2U3VHQ1	E3 ubiquitin-protein ligase TRIP12 isoform X1.	E2/E3 hybrid ubiquitin-protein ligase UBE2O.	0.814
TRIP12	UBE2W	A0A2U3VM55	A0A2U3ZK98	E3 ubiquitin-protein ligase TRIP12 isoform X1.	Ubiquitin-conjugating enzyme E2 W isoform X1.	0.881
UBA52	LOC101364011	A0A2U3ZJX2	A0A2U3W734	ubiquitin-60S ribosomal protein L40 isoform X1.	Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.	0.996
UBA52	TRIP12	A0A2U3ZJX2	A0A2U3VM55	ubiquitin-60S ribosomal protein L40 isoform X1.	E3 ubiquitin-protein ligase TRIP12 isoform X1.	0.806
UBA52	UBE2H	A0A2U3ZJX2	A0A2U3VS25	ubiquitin-60S ribosomal protein L40 isoform X1.	Ubiquitin-conjugating enzyme E2 H isoform X1; Belongs to the ubiquitin-conjugating enzyme family.	0.626
UBA52	UBE2J1	A0A2U3ZJX2	A0A2U3W7Y9	ubiquitin-60S ribosomal protein L40 isoform X1.	Ubiquitin-conjugating enzyme E2 J1.	0.726
UBA52	UBE2O	A0A2U3ZJX2	A0A2U3VHQ1	ubiquitin-60S ribosomal protein L40 isoform X1.	E2/E3 hybrid ubiquitin-protein ligase UBE2O.	0.716