LOC105757834 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105757834

Tripartite motif-containing protein 5-like. (306 aa)

Predicted Functional Partners:

PSMC5

0.460

IRF7

0.447

ADRM1

0.440

MAP1LC3A

0.437

MAP1LC3B

0.437

RPS27A

0.409

PSMC1

0.403

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADRM1	LOC105757834	A0A2U3WMH4	A0A2U3ZN05	Proteasomal ubiquitin receptor ADRM1.	Tripartite motif-containing protein 5-like.	0.440
ADRM1	PSMC1	A0A2U3WMH4	A0A2U3VI52	Proteasomal ubiquitin receptor ADRM1.	26S protease regulatory subunit 4 isoform X1; Belongs to the AAA ATPase family.	0.995
ADRM1	PSMC5	A0A2U3WMH4	A0A2U3ZLA3	Proteasomal ubiquitin receptor ADRM1.	26S protease regulatory subunit 8 isoform X1; Belongs to the AAA ATPase family.	0.985
ADRM1	RPS27A	A0A2U3WMH4	A0A2U3W6C1	Proteasomal ubiquitin receptor ADRM1.	ubiquitin-40S ribosomal protein S27a.	0.984
IRF7	LOC105757834	A0A2U3W6M5	A0A2U3ZN05	Interferon regulatory factor 7 isoform X1.	Tripartite motif-containing protein 5-like.	0.447
LOC105757834	ADRM1	A0A2U3ZN05	A0A2U3WMH4	Tripartite motif-containing protein 5-like.	Proteasomal ubiquitin receptor ADRM1.	0.440
LOC105757834	IRF7	A0A2U3ZN05	A0A2U3W6M5	Tripartite motif-containing protein 5-like.	Interferon regulatory factor 7 isoform X1.	0.447
LOC105757834	MAP1LC3A	A0A2U3ZN05	A0A2U3VEP2	Tripartite motif-containing protein 5-like.	Microtubule-associated proteins 1A/1B light chain 3A.	0.437
LOC105757834	MAP1LC3B	A0A2U3ZN05	A0A2U3ZDI2	Tripartite motif-containing protein 5-like.	Microtubule-associated proteins 1A/1B light chain 3B isoform X1.	0.437
LOC105757834	PSMC1	A0A2U3ZN05	A0A2U3VI52	Tripartite motif-containing protein 5-like.	26S protease regulatory subunit 4 isoform X1; Belongs to the AAA ATPase family.	0.403
LOC105757834	PSMC5	A0A2U3ZN05	A0A2U3ZLA3	Tripartite motif-containing protein 5-like.	26S protease regulatory subunit 8 isoform X1; Belongs to the AAA ATPase family.	0.460
LOC105757834	RPS27A	A0A2U3ZN05	A0A2U3W6C1	Tripartite motif-containing protein 5-like.	ubiquitin-40S ribosomal protein S27a.	0.409
MAP1LC3A	LOC105757834	A0A2U3VEP2	A0A2U3ZN05	Microtubule-associated proteins 1A/1B light chain 3A.	Tripartite motif-containing protein 5-like.	0.437
MAP1LC3A	MAP1LC3B	A0A2U3VEP2	A0A2U3ZDI2	Microtubule-associated proteins 1A/1B light chain 3A.	Microtubule-associated proteins 1A/1B light chain 3B isoform X1.	0.901
MAP1LC3A	RPS27A	A0A2U3VEP2	A0A2U3W6C1	Microtubule-associated proteins 1A/1B light chain 3A.	ubiquitin-40S ribosomal protein S27a.	0.500
MAP1LC3B	LOC105757834	A0A2U3ZDI2	A0A2U3ZN05	Microtubule-associated proteins 1A/1B light chain 3B isoform X1.	Tripartite motif-containing protein 5-like.	0.437
MAP1LC3B	MAP1LC3A	A0A2U3ZDI2	A0A2U3VEP2	Microtubule-associated proteins 1A/1B light chain 3B isoform X1.	Microtubule-associated proteins 1A/1B light chain 3A.	0.901
MAP1LC3B	RPS27A	A0A2U3ZDI2	A0A2U3W6C1	Microtubule-associated proteins 1A/1B light chain 3B isoform X1.	ubiquitin-40S ribosomal protein S27a.	0.500
PSMC1	ADRM1	A0A2U3VI52	A0A2U3WMH4	26S protease regulatory subunit 4 isoform X1; Belongs to the AAA ATPase family.	Proteasomal ubiquitin receptor ADRM1.	0.995
PSMC1	LOC105757834	A0A2U3VI52	A0A2U3ZN05	26S protease regulatory subunit 4 isoform X1; Belongs to the AAA ATPase family.	Tripartite motif-containing protein 5-like.	0.403