STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM178ATransmembrane protein 178A. (297 aa)    
Predicted Functional Partners:
KIAA0195
Uncharacterized protein KIAA0195 homolog.
      
 0.846
TMEM88
Transmembrane protein 88.
      
 0.732
PTCHD4
Patched domain-containing protein 4 isoform X1.
   
  
 0.717
NICN1
Nicolin-1 isoform X1.
      
 0.694
TMEM204
Transmembrane protein 204.
   
  
 0.632
MYPN
Myopalladin isoform X1.
      
 0.622
SLC4A11
Sodium bicarbonate transporter-like protein 11.
      
 0.616
TRPM3
Transient receptor potential cation channel subfamily M member 3.
      
 0.529
CHRDL2
Chordin-like protein 2 isoform X1.
      
 0.523
FTSJ3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
      
 0.521
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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