STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL4A6Collagen alpha-6(IV) chain. (1685 aa)    
Predicted Functional Partners:
GP6
Platelet glycoprotein VI.
     
 0.910
CD44
CD44 antigen.
    
 0.902
COL4A3
Collagen alpha-3(IV) chain.
  
0.900
COL4A5
Collagen alpha-5(IV) chain.
  
0.898
COL4A1
Collagen alpha-1(IV) chain.
  
0.898
ITGA1
Integrin alpha-1 isoform X1; Belongs to the integrin alpha chain family.
    
 0.787
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.777
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.763
ITGAV
Integrin alpha-V isoform X1; Belongs to the integrin alpha chain family.
    
 0.762
ITGA6
Integrin alpha-6 isoform X1; Belongs to the integrin alpha chain family.
    
 0.752
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.