STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EXD3LOW QUALITY PROTEIN: exonuclease mut-7 homolog. (771 aa)    
Predicted Functional Partners:
DBF4B
Protein DBF4 homolog B.
    
 
 0.731
RNF175
RING finger protein 175.
      
 0.723
EXD1
LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing protein 1.
      
 0.629
CPO
LOW QUALITY PROTEIN: carboxypeptidase O.
   
 
 0.625
NUDCD1
nudC domain-containing protein 1.
    
 
 0.543
PNLDC1
poly(A)-specific ribonuclease PARN-like domain-containing protein 1.
      
 0.522
EFCAB6
EF-hand calcium-binding domain-containing protein 6.
    
 0.495
PTAR1
Protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X1.
      
 0.463
FASTKD2
LOW QUALITY PROTEIN: FAST kinase domain-containing protein 2.
      
 0.455
TDRKH
Tudor and KH domain-containing protein.
      
 0.450
Your Current Organism:
Odobenus rosmarus
NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus
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