STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT87026.1Chromosome partitioning protein. (261 aa)    
Predicted Functional Partners:
SFT87012.1
Chromosome partitioning protein, ParB family.
 
 0.999
SFT67490.1
Hypothetical protein.
  
 
 0.922
SFT70021.1
16S rRNA (guanine527-N7)-methyltransferase.
 
  
 0.855
SFT69867.1
Chromosomal replication initiator protein.
 
 
 0.832
SFT86997.1
Protein of unknown function.
  
  
 0.819
scpA
Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
  
 0.755
SFT74362.1
Two-component system, chemotaxis family, response regulator CheV.
  
 
 0.714
topA
DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.687
SFT37525.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
  
 0.684
ffh
Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
  
  
 0.682
Your Current Organism:
Selenomonas ruminantium
NCBI taxonomy Id: 971
Other names: ATCC 12561, Ancyromonas ruminantium, CGMCC 1.2721, DSM 2150, JCM 6583, S. ruminantium, Selenomastix ruminantium, Spirillum ruminantium, strain GA-192, strain GA192
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.