STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102743442Autophagy-related protein 3. (314 aa)    
Predicted Functional Partners:
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.999
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.997
GABARAPL1
Gamma-aminobutyric acid receptor-associated protein-like 1 isoform X1.
  
 0.989
LOC102734169
Gamma-aminobutyric acid receptor-associated protein-like 2-like.
   
 0.984
ULK2
Serine/threonine-protein kinase ULK2.
   
 
 0.977
GABARAP
Gamma-aminobutyric acid receptor-associated protein.
  
 0.968
LOC102744509
Autophagy protein 5-like.
   
 0.949
MAP1LC3A
Microtubule-associated proteins 1A/1B light chain 3A isoform X1.
   
 0.914
LOC102730138
Microtubule-associated proteins 1A/1B light chain 3 beta 2-like isoform X2.
   
 0.914
UBA1
Ubiquitin-like modifier-activating enzyme 1 isoform X1; Belongs to the ubiquitin-activating E1 family.
    
 0.874
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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