STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTCHD1Patched domain-containing protein 1. (776 aa)    
Predicted Functional Partners:
SLC10A4
Sodium/bile acid cotransporter 4.
      
 0.588
DDX53
Probable ATP-dependent RNA helicase DDX53; Belongs to the DEAD box helicase family.
      
 0.580
LOC102728967
Interleukin-1 receptor accessory protein-like 1-like.
   
  
 0.504
FAM3C
Protein FAM3C.
      
 0.503
CBLN1
Cerebellin-1.
      
 0.497
NLGN3
Neuroligin-3 isoform X1.
      
 0.487
SLC16A2
Monocarboxylate transporter 8.
      
 0.481
SLC16A10
Monocarboxylate transporter 10.
      
 0.481
CEP76
Centrosomal protein of 76 kDa isoform X1.
      
 0.478
LOC102736400
Ellis-van Creveld syndrome protein-like.
      
 0.478
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.