STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VRK2Serine/threonine-protein kinase VRK2-like. (378 aa)    
Predicted Functional Partners:
LOC102741643
Rho-related GTP-binding protein RhoD-like.
    
  0.822
BANF1
Barrier-to-autointegration factor isoform X1.
    
 0.821
RIOK2
Serine/threonine-protein kinase RIO2 isoform X2.
    
 0.793
GOLGA4
Golgin subfamily A member 4 isoform X1.
    
 0.734
TSR1
pre-rRNA-processing protein TSR1 homolog.
    
 0.707
BANF2
Barrier-to-autointegration factor-like protein.
    
 0.669
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.643
CRY2
Cryptochrome-2.
    
 0.639
NUF2
Kinetochore protein Nuf2.
   
  
 0.628
PER1
Period circadian protein homolog 1.
    
 0.607
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.