STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH20Protocadherin-20-like. (951 aa)    
Predicted Functional Partners:
EGFL8
Epidermal growth factor-like protein 8.
     
 0.672
BRICD5
BRICHOS domain-containing protein 5.
      
 0.632
LOC102741057
Four-jointed box protein 1-like.
   
 0.587
LIX1
Protein limb expression 1 homolog.
   
 0.558
RAB9B
Ras-related protein Rab-9B isoform X1.
      
 0.543
DDO
D-aspartate oxidase.
      
 0.539
ZPLD1
Zona pellucida-like domain-containing protein 1.
      
 0.539
TTC6
Tetratricopeptide repeat protein 6 isoform X1.
   
  
 0.511
LOC102733761
Ras-related protein Rab-33A-like.
      
 0.503
LOC102744942
Arginine-glutamic acid dipeptide repeats protein-like.
    
 0.493
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.