STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZNF646Zinc finger protein 646. (1823 aa)    
Predicted Functional Partners:
PALD1
Paladin.
      
 0.769
RNF40
E3 ubiquitin protein ligase; Belongs to the BRE1 family.
   
  
 0.617
NAGK
N-acetyl-D-glucosamine kinase.
      
 0.587
GPR98
G-protein coupled receptor 98-like; Belongs to the G-protein coupled receptor 2 family.
      
 0.587
CHPT1
Cholinephosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      
 0.583
ASB8
Ankyrin repeat and SOCS box protein 8 isoform X1.
    
 0.577
STX4
Syntaxin-4; Belongs to the syntaxin family.
    
 
 0.566
GNG3
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
     
 0.548
DCAF12
DDB1- and CUL4-associated factor 12.
      
 0.546
TRAPPC6A
Trafficking protein particle complex subunit 6A isoform X2.
      
 0.546
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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