STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDHD1Pseudouridine-5'-monophosphatase. (212 aa)    
Predicted Functional Partners:
LOC102743879
LOW QUALITY PROTEIN: riboflavin kinase-like.
 
   
 0.962
ATHL1
Acid trehalase-like protein 1.
  
 
 0.946
LOC102741621
Serine--pyruvate aminotransferase.
    
 0.932
PGM3
Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.
   
 0.926
LOC102739837
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.923
LOC102735641
Protein YIPF.
    
 0.900
MPI
Mannose-6-phosphate isomerase.
   
 0.886
YRDC
yrdC domain-containing protein, mitochondrial.
  
 
  0.877
ADHFE1
Hydroxyacid-oxoacid transhydrogenase, mitochondrial isoform X1.
    
 0.867
AMY2B
Alpha-amylase.
  
 
 0.860
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.