SEC24A protein (Leptonychotes weddellii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEC24A

Protein transport protein Sec24A. (1100 aa)

Predicted Functional Partners:

SEC31B

0.976

LOC102738067

0.976

SEC23B

0.970

LOC102735638

0.953

SEC23A

0.948

SAR1B

0.906

LOC102732610

0.889

SEC16A

0.889

SEC24B

0.872

SAR1A

0.871

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102732610	LOC102735638	A0A2U3YEA4	A0A2U3Z152	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec24D-like.	0.933
LOC102732610	LOC102738067	A0A2U3YEA4	A0A2U3Z530	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec31B-like.	0.766
LOC102732610	SAR1A	A0A2U3YEA4	A0A2U3Z294	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	GTP-binding protein SAR1a; Belongs to the small GTPase superfamily. SAR1 family.	0.719
LOC102732610	SAR1B	A0A2U3YEA4	A0A2U3XI06	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	GTP-binding protein SAR1b; Belongs to the small GTPase superfamily. SAR1 family.	0.796
LOC102732610	SEC23A	A0A2U3YEA4	A0A2U3XEU3	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.883
LOC102732610	SEC23B	A0A2U3YEA4	A0A2U3XHM4	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.874
LOC102732610	SEC24A	A0A2U3YEA4	A0A2U3XHW9	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec24A.	0.889
LOC102732610	SEC24B	A0A2U3YEA4	A0A2U3X722	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec24B isoform X1.	0.895
LOC102732610	SEC31B	A0A2U3YEA4	A0A2U3Z4U4	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein transport protein Sec31B-like.	0.766
LOC102735638	LOC102732610	A0A2U3Z152	A0A2U3YEA4	Protein transport protein Sec24D-like.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.933
LOC102735638	LOC102738067	A0A2U3Z152	A0A2U3Z530	Protein transport protein Sec24D-like.	Protein transport protein Sec31B-like.	0.935
LOC102735638	SAR1A	A0A2U3Z152	A0A2U3Z294	Protein transport protein Sec24D-like.	GTP-binding protein SAR1a; Belongs to the small GTPase superfamily. SAR1 family.	0.719
LOC102735638	SAR1B	A0A2U3Z152	A0A2U3XI06	Protein transport protein Sec24D-like.	GTP-binding protein SAR1b; Belongs to the small GTPase superfamily. SAR1 family.	0.891
LOC102735638	SEC16A	A0A2U3Z152	A0A2U3YN31	Protein transport protein Sec24D-like.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.933
LOC102735638	SEC23A	A0A2U3Z152	A0A2U3XEU3	Protein transport protein Sec24D-like.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.976
LOC102735638	SEC23B	A0A2U3Z152	A0A2U3XHM4	Protein transport protein Sec24D-like.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.976
LOC102735638	SEC24A	A0A2U3Z152	A0A2U3XHW9	Protein transport protein Sec24D-like.	Protein transport protein Sec24A.	0.953
LOC102735638	SEC24B	A0A2U3Z152	A0A2U3X722	Protein transport protein Sec24D-like.	Protein transport protein Sec24B isoform X1.	0.942
LOC102735638	SEC31B	A0A2U3Z152	A0A2U3Z4U4	Protein transport protein Sec24D-like.	Protein transport protein Sec31B-like.	0.935
LOC102738067	LOC102732610	A0A2U3Z530	A0A2U3YEA4	Protein transport protein Sec31B-like.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.766