STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCBP4poly(RC)-binding protein 4 isoform X1. (403 aa)    
Predicted Functional Partners:
NCBP2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.573
LOC102740119
RNA-binding protein 38-like.
      
 0.542
HNRNPK
Heterogeneous nuclear ribonucleoprotein K isoform X1.
   
0.540
LOC102744816
Heterogeneous nuclear ribonucleoprotein C-like isoform X1.
   
 0.539
WEE1
Wee1-like protein kinase.
    
 
 0.524
POLR2D
DNA-directed RNA polymerase II subunit RPB4.
    
 0.523
HNRNPM
Heterogeneous nuclear ribonucleoprotein M isoform X1.
   
 0.518
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.515
LOC102749155
Serine/arginine-rich splicing factor 3-like.
   
 0.515
POLR2L
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
  0.501
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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