STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSBLupus La protein homolog. (406 aa)    
Predicted Functional Partners:
LOC102735800
Methionine aminopeptidase 2-like.
   
    0.866
HNRNPA2B1
Heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1.
   
 
 0.853
ZC3H15
Zinc finger CCCH domain-containing protein 15 isoform X1.
   
    0.815
DNAJC2
dnaJ homolog subfamily C member 2 isoform X1.
   
    0.804
NAA15
N-alpha-acetyltransferase 15, NatA auxiliary subunit.
   
    0.792
LOC102749155
Serine/arginine-rich splicing factor 3-like.
   
  
 0.738
SNRPD2
Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.
   
 
 0.735
CCT8
T-complex protein 1 subunit theta isoform X2.
   
  
 0.733
LOC102744816
Heterogeneous nuclear ribonucleoprotein C-like isoform X1.
   
 
 0.716
NOP58
Nucleolar protein 58 isoform X1.
   
   0.709
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.