STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102736167Serine/arginine repetitive matrix protein 1-like. (479 aa)    
Predicted Functional Partners:
SRRM2
Serine/arginine repetitive matrix protein 2-like.
   
 0.984
UPF3B
Regulator of nonsense transcripts 3B isoform X1.
    
 0.964
PRPF38A
pre-mRNA-splicing factor 38A.
   
 0.940
WBP11
WW domain-binding protein 11.
   
 0.938
SRRM1
Serine/arginine repetitive matrix protein 1-like.
 
     0.938
RNPS1
RNA-binding protein with serine-rich domain 1 isoform X1.
   
 0.936
CDC40
pre-mRNA-processing factor 17.
    
 0.930
LOC102742059
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.930
MFAP1
Microfibrillar-associated protein 1.
   
  0.926
RBM25
RNA-binding protein 25.
   
 0.925
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.