STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBP5Retinol-binding protein 5; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (135 aa)    
Predicted Functional Partners:
BBOX1
Gamma-butyrobetaine dioxygenase.
      
 0.727
UPK2
Uroplakin-2.
      
 0.723
UPK3B
Uroplakin-3b.
      
 0.694
UPK1A
Tetraspanin.
      
 0.658
RDH5
11-cis retinol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.629
ENPEP
Aminopeptidase.
      
 0.586
SLC12A1
Solute carrier family 12 member 1 isoform X2.
     
 0.558
TMEM52B
Transmembrane protein 52B.
      
 0.541
UBP1
Upstream-binding protein 1 isoform X2.
     
 0.498
FNTA
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
      
 0.479
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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