STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAF7E3 ubiquitin-protein ligase TRAF7. (670 aa)    
Predicted Functional Partners:
UBA52
ubiquitin-60S ribosomal protein L40 isoform X3.
    
  0.999
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.933
ISG15
Ubiquitin-like protein ISG15.
    
 0.929
LOC102750322
polyubiquitin-B-like.
    
 0.929
UBL4B
Ubiquitin-like protein 4B.
    
 0.929
LOC102729636
polyubiquitin-B-like.
    
 0.929
OASL
2'-5'-oligoadenylate synthase-like protein isoform X1.
    
 0.929
LOC102742404
Ubiquitin-like protein 4A-like.
    
 0.929
LOC102741141
Ubiquitin D-like.
    
 0.929
SKP1
S-phase kinase-associated protein 1 isoform X1; Belongs to the SKP1 family.
    
 0.894
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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