STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNPS1RNA-binding protein with serine-rich domain 1 isoform X1. (140 aa)    
Predicted Functional Partners:
LOC102743069
Histone deacetylase complex subunit SAP18; Component of the SIN3-repressing complex. Enhances the ability of SIN3-HDAC1-mediated transcriptional repression. When tethered to the promoter, it can direct the formation of a repressive complex to core histone proteins. Auxiliary component of the splicing- dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or durin [...]
   
 0.998
LOC102730310
Pinin-like.
   
 0.993
UPF3B
Regulator of nonsense transcripts 3B isoform X1.
   
 0.993
LOC102736431
Eukaryotic initiation factor 4A-III-like.
   
 0.993
LOC102734435
Regulator of nonsense transcripts 2-like.
    
 0.988
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.985
CSTF2
Cleavage stimulation factor subunit 2 isoform X1.
   
 0.977
LOC102740606
SUMO-conjugating enzyme UBC9-like; Belongs to the ubiquitin-conjugating enzyme family.
   
   0.963
LOC102736167
Serine/arginine repetitive matrix protein 1-like.
   
 0.936
SRRM1
Serine/arginine repetitive matrix protein 1-like.
   
 0.936
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.