STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSTAcystatin-A; Belongs to the cystatin family. (98 aa)    
Predicted Functional Partners:
AURKB
Aurora kinase B isoform X1; Belongs to the protein kinase superfamily.
   
 0.749
RANGAP1
Ran GTPase-activating protein 1.
   
 
 0.608
LOC102725978
Cytochrome c 2-like; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.597
LOC102750923
Cytochrome c-like; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.597
NPVF
pro-FMRFamide-related neuropeptide VF.
    
 0.597
CTSB
Cathepsin B; Belongs to the peptidase C1 family.
   
 0.591
SEC24A
Protein transport protein Sec24A.
    
 
 0.556
LOC102746787
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like.
    
   0.480
LOC102750370
Small acidic protein.
      
 0.476
RNF4
E3 ubiquitin-protein ligase RNF4.
     
 0.473
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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