STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDC5LCell division cycle 5-like protein isoform X1. (802 aa)    
Predicted Functional Partners:
PLRG1
Pleiotropic regulator 1 isoform X1.
   
 0.999
BCAS2
pre-mRNA-splicing factor SPF27.
   
 0.999
PRPF19
pre-mRNA-processing factor 19 isoform X1.
   
 0.999
LOC102743431
Spliceosome-associated protein CWC15 homolog isoform X1.
   
 0.999
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.992
CDC40
pre-mRNA-processing factor 17.
   
 
 0.991
LOC102731237
SNW domain-containing protein 1-like.
   
 
 0.990
CWC22
pre-mRNA-splicing factor CWC22 homolog.
   
 
 0.988
LOC102734854
Splicing factor 3B subunit 1-like.
   
 
 0.987
AQR
RNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing.
   
 
 0.986
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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