STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGLYRP1Peptidoglycan-recognition protein; Pattern receptor that binds to murein peptidoglycans (PGN) of Gram-positive bacteria. May kill Gram-positive bacteria by interfering with peptidoglycan biosynthesis. Involved in innate immunity. (196 aa)    
Predicted Functional Partners:
CAMP
Cathelicidin antimicrobial peptide.
   
  
 0.747
TRIM14
Tripartite motif-containing protein 14.
   
  
 0.639
PGLYRP2
N-acetylmuramoyl-L-alanine amidase.
  
 
0.608
ACSM5
LOW QUALITY PROTEIN: acyl-coenzyme A synthetase ACSM5, mitochondrial.
      
 0.571
SDS
L-serine dehydratase/L-threonine deaminase.
   
 0.525
UBE2W
Ubiquitin-conjugating enzyme E2 W.
 
   
  0.522
IKBKG
NF-kappa-B essential modulator isoform X2.
      
 0.473
LOC102747137
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
      
 0.473
RUVBL2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
      
 0.473
MITD1
MIT domain-containing protein 1.
      
 0.467
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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