STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A1Collagen alpha-1(VI) chain. (1027 aa)    
Predicted Functional Partners:
COL6A2
Collagen alpha-2(VI) chain.
  
0.998
LOC102742903
Collagen alpha-1(I) chain-like.
  
0.980
LOC102750303
Collagen alpha-1(I) chain-like.
  
0.979
COL1A2
Collagen alpha-2(I) chain.
  
0.968
VWA2
Von Willebrand factor A domain-containing protein 2.
   
0.908
ITGA5
Integrin alpha-5; Belongs to the integrin alpha chain family.
    
 0.880
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.880
COL2A1
Collagen alpha-1(II) chain isoform X1.
  
0.854
ITGA7
Integrin alpha-7; Belongs to the integrin alpha chain family.
    
 0.851
ITGA10
LOW QUALITY PROTEIN: integrin alpha-10; Belongs to the integrin alpha chain family.
   
 
 0.850
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.