STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM34RNA-binding protein 34. (342 aa)    
Predicted Functional Partners:
BRIX1
Ribosome biogenesis protein BRX1 homolog.
   
 
 0.971
RPF2
Ribosome production factor 2 homolog.
   
 
 0.967
FTSJ3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 
 0.951
DDX56
Probable ATP-dependent RNA helicase DDX56 isoform X1.
   
 0.947
DDX27
Probable ATP-dependent RNA helicase DDX27; Belongs to the DEAD box helicase family.
   
 0.943
DDX24
ATP-dependent RNA helicase DDX24-like; Belongs to the DEAD box helicase family.
   
 0.934
UTP14A
U3 small nucleolar RNA-associated protein 14 homolog A isoform X1.
   
 
 0.933
NOC2L
Nucleolar complex protein 2 homolog.
   
 
 0.932
WDR74
WD repeat-containing protein 74 isoform X1.
   
 
 0.928
LOC102730920
Periodic tryptophan protein 1 homolog.
   
 
 0.922
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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