STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM3Tripartite motif-containing protein 3-like isoform X1. (519 aa)    
Predicted Functional Partners:
LOC102741779
Tripartite motif-containing protein 3-like.
 
      0.900
LOC102750322
polyubiquitin-B-like.
    
  0.621
UBE2D3
Ubiquitin-conjugating enzyme E2 D3 isoform X3; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.613
LOC102728106
Ubiquitin-conjugating enzyme E2 D2-like; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.547
RAI2
Retinoic acid-induced protein 2 isoform X1.
    
 0.516
EI24
Etoposide-induced protein 2.4 homolog isoform X1.
      
 0.493
LOC102746104
Tripartite motif-containing protein 35-like.
      
 0.493
LOC102731991
E3 ubiquitin-protein ligase TRIM11-like.
      
 0.489
INO80
DNA helicase INO80-like.
    
 
 0.486
TRIM8
Probable E3 ubiquitin-protein ligase TRIM8.
    
 
 0.477
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.