LOC102742841 protein (Leptonychotes weddellii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102742841

Janus kinase and microtubule-interacting protein 2-like. (467 aa)

Predicted Functional Partners:

JAKMIP2

0.944

LOC102725867

0.495

LOC102741720

0.486

FGD4

0.475

LOC102732447

0.468

Your Current Organism:

Leptonychotes weddellii

NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FGD4	JAKMIP2	A0A2U3X8K0	A0A2U3XMI8	FYVE, RhoGEF and PH domain-containing protein 4.	Janus kinase and microtubule-interacting protein 2.	0.475
FGD4	LOC102742841	A0A2U3X8K0	A0A2U3YVV4	FYVE, RhoGEF and PH domain-containing protein 4.	Janus kinase and microtubule-interacting protein 2-like.	0.475
JAKMIP2	FGD4	A0A2U3XMI8	A0A2U3X8K0	Janus kinase and microtubule-interacting protein 2.	FYVE, RhoGEF and PH domain-containing protein 4.	0.475
JAKMIP2	LOC102725867	A0A2U3XMI8	A0A2U3YYF4	Janus kinase and microtubule-interacting protein 2.	Fibronectin type III and SPRY domain-containing protein 1-like.	0.495
JAKMIP2	LOC102732447	A0A2U3XMI8	A0A2U3Z4M1	Janus kinase and microtubule-interacting protein 2.	Nucleoredoxin-like.	0.468
JAKMIP2	LOC102741720	A0A2U3XMI8	A0A2U3YMR9	Janus kinase and microtubule-interacting protein 2.	Synaptic vesicle membrane protein VAT-1 homolog-like.	0.486
JAKMIP2	LOC102742841	A0A2U3XMI8	A0A2U3YVV4	Janus kinase and microtubule-interacting protein 2.	Janus kinase and microtubule-interacting protein 2-like.	0.944
LOC102725867	JAKMIP2	A0A2U3YYF4	A0A2U3XMI8	Fibronectin type III and SPRY domain-containing protein 1-like.	Janus kinase and microtubule-interacting protein 2.	0.495
LOC102725867	LOC102742841	A0A2U3YYF4	A0A2U3YVV4	Fibronectin type III and SPRY domain-containing protein 1-like.	Janus kinase and microtubule-interacting protein 2-like.	0.495
LOC102732447	JAKMIP2	A0A2U3Z4M1	A0A2U3XMI8	Nucleoredoxin-like.	Janus kinase and microtubule-interacting protein 2.	0.468
LOC102732447	LOC102742841	A0A2U3Z4M1	A0A2U3YVV4	Nucleoredoxin-like.	Janus kinase and microtubule-interacting protein 2-like.	0.468
LOC102741720	JAKMIP2	A0A2U3YMR9	A0A2U3XMI8	Synaptic vesicle membrane protein VAT-1 homolog-like.	Janus kinase and microtubule-interacting protein 2.	0.486
LOC102741720	LOC102742841	A0A2U3YMR9	A0A2U3YVV4	Synaptic vesicle membrane protein VAT-1 homolog-like.	Janus kinase and microtubule-interacting protein 2-like.	0.486
LOC102742841	FGD4	A0A2U3YVV4	A0A2U3X8K0	Janus kinase and microtubule-interacting protein 2-like.	FYVE, RhoGEF and PH domain-containing protein 4.	0.475
LOC102742841	JAKMIP2	A0A2U3YVV4	A0A2U3XMI8	Janus kinase and microtubule-interacting protein 2-like.	Janus kinase and microtubule-interacting protein 2.	0.944
LOC102742841	LOC102725867	A0A2U3YVV4	A0A2U3YYF4	Janus kinase and microtubule-interacting protein 2-like.	Fibronectin type III and SPRY domain-containing protein 1-like.	0.495
LOC102742841	LOC102732447	A0A2U3YVV4	A0A2U3Z4M1	Janus kinase and microtubule-interacting protein 2-like.	Nucleoredoxin-like.	0.468
LOC102742841	LOC102741720	A0A2U3YVV4	A0A2U3YMR9	Janus kinase and microtubule-interacting protein 2-like.	Synaptic vesicle membrane protein VAT-1 homolog-like.	0.486